I have added a new feature to the simple portable SQL Server query tool, QTool, that I made some time ago (here). Now, you can enter several connections strings in the Connection String tab, and use a drop down list to choose what connection you want your query to run on.

Additionally, you can add a name to the connection by typing a name followed by a colon in front of the connection string for a more clean display in the drop down list.

You can download it from here.

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